To cite protti in publications, please use:

  Quast, J.P., Schuster, D., Picotti, P. (2022). protti: an R package
  for comprehensive data analysis of peptide- and protein-centric
  bottom-up proteomics data. Bioinformatics Advances, 2(1).

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Jan-Philipp Quast and Dina Schuster and Paola Picotti},
    title = {protti: an R package for comprehensive data analysis of peptide- and protein-centric bottom-up proteomics data},
    journal = {Bioinformatics Advances},
    year = {2022},
    volume = {2},
    number = {1},
  }