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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "protti" in publications use:'
type: software
license: MIT
title: 'protti: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis
  Tools'
version: 0.9.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.protti
abstract: Useful functions and workflows for proteomics quality control and data analysis
  of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014)
  <https://doi.org/10.1038/nbt.2999>) and regular bottom-up proteomics experiments.
  Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome
  Discover' can be easily used due to flexibility of functions.
authors:
- family-names: Quast
  given-names: Jan-Philipp
  email: quast@imsb.biol.ethz.ch
  orcid: https://orcid.org/0000-0003-2713-778X
- family-names: Schuster
  given-names: Dina
  email: dschuster@ethz.ch
  orcid: https://orcid.org/0000-0001-6611-8237
preferred-citation:
  type: article
  title: 'protti: an R package for comprehensive data analysis of peptide- and protein-centric
    bottom-up proteomics data'
  authors:
  - family-names: Quast
    given-names: Jan-Philipp
    email: quast@imsb.biol.ethz.ch
    orcid: https://orcid.org/0000-0003-2713-778X
  - family-names: Schuster
    given-names: Dina
    email: dschuster@ethz.ch
    orcid: https://orcid.org/0000-0001-6611-8237
  - family-names: Picotti
    given-names: Paola
  journal: Bioinformatics Advances
  year: '2022'
  volume: '2'
  issue: '1'
repository: https://jpquast.r-universe.dev
repository-code: https://github.com/jpquast/protti
commit: d5f7503e7bf5a693625ff751ac510f4e58bf1ead
url: https://jpquast.github.io/protti/
contact:
- family-names: Quast
  given-names: Jan-Philipp
  email: quast@imsb.biol.ethz.ch
  orcid: https://orcid.org/0000-0003-2713-778X